Multiple Sequence Alignment with Suffix Tree
This project is aimed at improving a part of HAlign2.0, which could align multiple nucleotide sequences fast and accurately.
java -jar halign-stmsa.jar infile
Detailed usage could be found at Github or run the software with optional argument
please note that this software is dependent on java 11 or higher version
Software documentation could be found at Github Wiki.
Source code could be found at Github.
Compiled jar file could be downloaded at Github release page.
We have developed a webpage with a few effects to help do pairwise alignment online with Needleman-Wunsch algorithm.